Effects of NF-κB oligonucleotide "decoys" on gene expression in P7 rat hippocampus after hypoxia/ischemia

Jingxin Qiu, Xiaoming Hu, Olivera Nesic, Marjorie R. Grafe, David K. Rassin, Thomas G. Wood, J. Regino Perez-Polo

Research output: Contribution to journalArticlepeer-review

25 Scopus citations


"Decoy" oligonucleotides can be used as gene-specific nuclear factor (NF-κB) inhibitors to regulate gene expression. We applied two different decoy oligonucleotides that contained the NF-κB binding consensus sequences present in the immunoglobulin G (IgG)-κB and Bcl-x promoter into 7-day-old (P7) rat lateral ventricles before hypoxia/ischemia (HI) and compared their effects on gene expression in hippocampi to saline-treated, scrambled decoy-treated, or untreated hippocampi exposed to HI. Left hippocampi were collected at 12 hr after HI. Electrophoretic mobility shift assays (EMSAs) showed that the two decoy treatments had different effects on NF-κB binding to the IgG-κB and Bcl-x promoter-specific consensus sequences, respectively. We assessed the decoys' effects on gene expression 12 hr after HI using ribonuclease protection assays (RPAs) and Affymetrix DNA microarrays. RPAs showed that both decoys significantly decreased interleukin (IL)-1α mRNA levels but had no impact on IL-1β, IL-6, and IL-10 mRNA levels. IgG-κB decoys significantly decreased tumor necrosis factor (TNF)-α and TNF-β mRNA levels compared to minimal changes after treatment with Bcl-x decoys. DNA microarray analyses showed that Bcl-xL decoy treatment significantly decreased Bcl-xL mRNA levels. The decreased Bcl-xL mRNA levels after Bcl-x decoy treatment was confirmed by RPA analysis. DNA microarray data also indicated that several other genes were affected by both decoys. Our results suggest that different NF-κB decoy treatments could differentially regulate transcriptional responses to central nervous system trauma. Careful design of decoy sequences, however, is essential to acquire selective effects on cell death outcome.

Original languageEnglish (US)
Pages (from-to)108-118
Number of pages11
JournalJournal of Neuroscience Research
Issue number1
StatePublished - Jul 1 2004
Externally publishedYes


  • Bcl-x, inflammation
  • Decoy
  • Hypoxia/ischemia
  • NF-κB

ASJC Scopus subject areas

  • Cellular and Molecular Neuroscience


Dive into the research topics of 'Effects of NF-κB oligonucleotide "decoys" on gene expression in P7 rat hippocampus after hypoxia/ischemia'. Together they form a unique fingerprint.

Cite this