Research output per year
Research output per year
- 1 - 50 out of 276 results
Search results
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2022
Effects of Conformational Constraint on Peptide Solubility Limits
Workman, R. J., Gorle, S. & Pettitt, B. M., Dec 15 2022, In: Journal of Physical Chemistry B. 126, 49, p. 10510-10518 9 p.Research output: Contribution to journal › Article › peer-review
Open Access -
Assessment of the Components of the Electrostatic Potential of Proteins in Solution: Comparing Experiment and Theory
Chen, C., Yu, B., Yousefi, R., Iwahara, J. & Pettitt, B. M., Jun 23 2022, In: Journal of Physical Chemistry B. 126, 24, p. 4543-4554 12 p.Research output: Contribution to journal › Article › peer-review
Open Access -
The Effects of Flexibility on dsDNA–dsDNA Interactions
Chen, C. & Pettitt, B. M., May 2022, In: Life. 12, 5, 699.Research output: Contribution to journal › Article › peer-review
Open Access -
2021
Multiple signals in the gut contract the mouse norovirus capsid to block antibody binding while enhancing receptor affinity
Williams, A. N., Sherman, M. B., Smith, H. Q., Taube, S., Pettitt, B. M., Wobus, C. E. & Smith, T. J., Nov 2021, In: Journal of virology. 95, 22, e01471-21.Research output: Contribution to journal › Article › peer-review
Open Access -
Contributions of higher-order proximal distribution functions to solvent structure around proteins
Yousefi, R., Lynch, G. C., Galbraith, M. & Pettitt, B. M., Sep 14 2021, In: Journal of Chemical Physics. 155, 10, 104110.Research output: Contribution to journal › Article › peer-review
Open Access -
De novo determination of near-surface electrostatic potentials by NMR
Yu, B., Pletka, C. C., Montgomery Pettitt, B. & Iwahara, J., Jun 22 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 25, e2104020118.Research output: Contribution to journal › Article › peer-review
Open Access -
A norovirus uses bile salts to escape antibody recognition while enhancing receptor binding
Williams, A. N., Sherman, M. B., Smith, H. Q., Taube, S., Pettitt, B. M., Wobus, C. E. & Smith, T. J., Jun 2021, In: Journal of virology. 95, 13, e00176-21.Research output: Contribution to journal › Article › peer-review
Open Access -
Quantitative description of a contractile macromolecular machine
Fraser, A., Prokhorov, N. S., Jiao, F., Pettitt, B. M., Scheuring, S. & Leiman, P. G., Jun 2021, In: Science Advances. 7, 24, eabf9601.Research output: Contribution to journal › Article › peer-review
Open Access -
2020
Tribute to Peter J. Rossky
Pettitt, B. M., Schwartz, B. J., Sterpone, F., Túri, L. & Willard, A. P., Nov 25 2020, In: Journal of Physical Chemistry B Materials. 124, 47, p. 10591-10593 3 p.Research output: Contribution to journal › Article › peer-review
Open Access -
Effects of model shape, volume, and softness of the capsid for DNA packaging of phi29
Montgomery Pettitt, B., Bores, C., Woodson, M. & Morais, M. C., Nov 19 2020, In: Journal of Physical Chemistry B. 124, 46, p. 10337-10344 8 p.Research output: Contribution to journal › Article › peer-review
Open Access -
Dynamics of ionic interactions at protein-nucleic acid interfaces
Yu, B., Pettitt, B. M. & Iwahara, J., Sep 15 2020, In: Accounts of Chemical Research. 53, 9, p. 1802-1810 9 p.Research output: Contribution to journal › Article › peer-review
Open Access6 Scopus citations -
Physical Chemistry of the Protein Backbone: Enabling the Mechanisms of Intrinsic Protein Disorder
Drake, J. A., Drake, J. A. & Pettitt, B. M., Jun 4 2020, In: Journal of Physical Chemistry B. 124, 22, p. 4379-4390 12 p.Research output: Contribution to journal › Article › peer-review
Open Access -
The lac repressor hinge helix in context: The effect of the DNA binding domain and symmetry
Seckfort, D., Lynch, G. C. & Pettitt, B. M., Apr 2020, In: Biochimica et Biophysica Acta - General Subjects. 1864, 4, 129538.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
Interactions between identical DNA double helices
Lai, C. L., Chen, C., Ou, S. C., Prentiss, M. & Pettitt, B. M., Mar 2020, In: Physical Review E. 101, 3, 032414.Research output: Contribution to journal › Article › peer-review
Open Access5 Scopus citations -
Structure and the role of filling rate on model dsDNA packed in a phage capsid
Bores, C. & Pettitt, B. M., Jan 13 2020, In: Physical Review E. 101, 1, 012406.Research output: Contribution to journal › Article › peer-review
2 Scopus citations -
2019
Experimental Evidence of Solvent-Separated Ion Pairs as Metastable States in Electrostatic Interactions of Biological Macromolecules
Yu, B., Pettitt, B. M. & Iwahara, J., Dec 19 2019, In: Journal of Physical Chemistry Letters. 10, 24, p. 7937-7941 5 p.Research output: Contribution to journal › Article › peer-review
Open Access4 Scopus citations -
Allosteric discrimination at the NADH/ADP regulatory site of glutamate dehydrogenase
Nassar, O. M., Wong, K. Y., Lynch, G., Smith, T. J. & Pettitt, B. M., Dec 1 2019, In: Protein Science. 28, 12, p. 2080-2088 9 p.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
Mobility of Histidine Side Chains Analyzed with 15 N NMR Relaxation and Cross-Correlation Data: Insight into Zinc-Finger-DNA Interactions
Kemme, C. A., Luu, R. H., Chen, C., Pletka, C. C., Pettitt, B. M. & Iwahara, J., May 2 2019, In: Journal of Physical Chemistry B. 123, 17, p. 3706-3710 5 p.Research output: Contribution to journal › Article › peer-review
Open Access2 Scopus citations -
Free Energy Calculations Based on Coupling Proximal Distribution Functions and Thermodynamic Cycles
Ou, S. C. & Pettitt, B. M., Apr 9 2019, In: Journal of Chemical Theory and Computation. 15, 4, p. 2649-2658 10 p.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
Glutamate dehydrogenase: Structure of a hyperinsulinism mutant, corrections to the atomic model, and insights into a regulatory site
Nassar, O. M., Li, C., Stanley, C. A., Pettitt, B. M. & Smith, T. J., Jan 2019, In: Proteins: Structure, Function and Bioinformatics. 87, 1, p. 41-50 10 p.Research output: Contribution to journal › Article › peer-review
Open Access5 Scopus citations -
Price of disorder in the lac repressor hinge helix
Seckfort, D. & Montgomery Pettitt, B., Jan 2019, In: Biopolymers. 110, 1, e23239.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
2018
Visualizing Individual RuBisCO and Its Assembly into Carboxysomes in Marine Cyanobacteria by Cryo-Electron Tomography
Dai, W., Chen, M., Myers, C., Ludtke, S. J., Pettitt, B. M., King, J. A., Schmid, M. F. & Chiu, W., Oct 19 2018, In: Journal of Molecular Biology. 430, 21, p. 4156-4167 12 p.Research output: Contribution to journal › Article › peer-review
Open Access16 Scopus citations -
Thermodynamics of Conformational Transitions in a Disordered Protein Backbone Model
Drake, J. A. & Pettitt, B. M., Jun 19 2018, In: Biophysical journal. 114, 12, p. 2799-2810 12 p.Research output: Contribution to journal › Article › peer-review
Open Access5 Scopus citations -
Peptide Solubility Limits: Backbone and Side-Chain Interactions
Sarma, R., Wong, K. Y., Lynch, G. C. & Pettitt, B. M., Apr 5 2018, In: Journal of Physical Chemistry B. 122, 13, p. 3528-3539 12 p.Research output: Contribution to journal › Article › peer-review
Open Access6 Scopus citations -
2017
Optimal updating magnitude in adaptive flat-distribution sampling
Zhang, C., Drake, J. A., Ma, J. & Pettitt, B. M., Nov 7 2017, In: Journal of Chemical Physics. 147, 17, 174105.Research output: Contribution to journal › Article › peer-review
Open Access -
Norovirus escape from broadly neutralizing antibodies is limited to allostery-like mechanisms
Kolawole, A. O., Smith, H. Q., Svoboda, S. A., Lewis, M. S., Sherman, M. B., Lynch, G., Pettitt, B. M., Smith, T. J. & Wobus, C. E., Sep 1 2017, In: mSphere. 2, 5, e00334-17.Research output: Contribution to journal › Article › peer-review
Open Access18 Scopus citations -
Intramolecular Interactions Overcome Hydration to Drive the Collapse Transition of Gly15
Asthagiri, D., Karandur, D., Tomar, D. S. & Pettitt, B. M., Aug 31 2017, In: Journal of Physical Chemistry B. 121, 34, p. 8078-8084 7 p.Research output: Contribution to journal › Article › peer-review
Open Access17 Scopus citations -
Influence of DNA sequence on the structure of minicircles under torsional stress
Wang, Q., Irobalieva, R. N., Chiu, W., Schmid, M. F., Fogg, J. M., Zechiedrich, L. & Pettitt, B. M., Jul 1 2017, In: Nucleic acids research. 45, 13, p. 7633-7642 10 p.Research output: Contribution to journal › Article › peer-review
Open Access17 Scopus citations -
Phage-like packing structures with mean field sequence dependence
Myers, C. G. & Pettitt, B. M., Jun 5 2017, In: Journal of Computational Chemistry. 38, 15, p. 1191-1197 7 p.Research output: Contribution to journal › Article › peer-review
Open Access7 Scopus citations -
Nonpolar Solvation Free Energy from Proximal Distribution Functions
Ou, S. C., Drake, J. A. & Pettitt, B. M., Apr 20 2017, In: Journal of Physical Chemistry B. 121, 15, p. 3555-3564 10 p.Research output: Contribution to journal › Article › peer-review
Open Access4 Scopus citations -
2016
Accelerating the weighted histogram analysis method by direct inversion in the iterative subspace
Zhang, C., Lai, C. L. & Pettitt, B. M., Sep 1 2016, In: Molecular Simulation. 42, 13, p. 1079-1089 11 p.Research output: Contribution to journal › Article › peer-review
Open Access9 Scopus citations -
Solute-Solvent Energetics Based on Proximal Distribution Functions
Ou, S. C. & Pettitt, B. M., Aug 25 2016, In: Journal of Physical Chemistry B. 120, 33, p. 8230-8237 8 p.Research output: Contribution to journal › Article › peer-review
Open Access8 Scopus citations -
Solvation Thermodynamics of Oligoglycine with Respect to Chain Length and Flexibility
Drake, J. A., Harris, R. C. & Pettitt, B. M., Aug 23 2016, In: Biophysical journal. 111, 4, p. 756-767 12 p.Research output: Contribution to journal › Article › peer-review
Open Access9 Scopus citations -
Dielectric behavior for saline solutions from renormalized diagrammatically proper interaction site model theory
Dyer, K. M., Perkyns, J. S. & Pettitt, B. M., Aug 22 2016, In: Journal of Physics Condensed Matter. 28, 41, 414006.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
Changes in conformational dynamics of basic side chains upon protein-DNA association
Esadze, A., Chen, C., Zandarashvili, L., Roy, S., Pettitt, B. M. & Iwahara, J., Aug 19 2016, In: Nucleic acids research. 44, 14, p. 6961-6970 10 p.Research output: Contribution to journal › Article › peer-review
Open Access42 Scopus citations -
Sequence Affects the Cyclization of DNA Minicircles
Wang, Q. & Pettitt, B. M., Mar 17 2016, In: Journal of Physical Chemistry Letters. 7, 6, p. 1045-1046 2 p.Research output: Contribution to journal › Article › peer-review
Open Access10 Scopus citations -
DNA Shape versus Sequence Variations in the Protein Binding Process
Chen, C. & Pettitt, B. M., Feb 2 2016, In: Biophysical journal. 110, 3, p. 534-544 11 p.Research output: Contribution to journal › Article › peer-review
Open Access4 Scopus citations -
Importance of Hydrophilic Hydration and Intramolecular Interactions in the Thermodynamics of Helix-Coil Transition and Helix-Helix Assembly in a Deca-Alanine Peptide
Tomar, D. S., Weber, V., Pettitt, B. M. & Asthagiri, D., Jan 14 2016, In: Journal of Physical Chemistry B. 120, 1, p. 69-76 8 p.Research output: Contribution to journal › Article › peer-review
Open Access16 Scopus citations -
Protein collapse driven against solvation free energy without H-bonds
Karandur, D., Harris, R. C. & Pettitt, B. M., Jan 1 2016, In: Protein Science. 25, 1, p. 103-110 8 p.Research output: Contribution to journal › Article › peer-review
Open Access13 Scopus citations -
The contribution of electrostatic interactions to the collapse of oligoglycine in water
Karandur, D. & Pettitt, B. M., 2016, In: Condensed Matter Physics. 19, 2, 23802.Research output: Contribution to journal › Article › peer-review
Open Access2 Scopus citations -
2015
Examining the Assumptions Underlying Continuum-Solvent Models
Harris, R. C. & Pettitt, B. M., Sep 1 2015, In: Journal of Chemical Theory and Computation. 11, 10, p. 4593-4600 8 p.Research output: Contribution to journal › Article › peer-review
Open Access15 Scopus citations -
Solubility Limits in Lennard-Jones Mixtures: Effects of Disparate Molecule Geometries
Dyer, K. M., Perkyns, J. S. & Pettitt, B. M., Jul 23 2015, In: Journal of Physical Chemistry B. 119, 29, p. 9450-9459 10 p.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
Dynamic equilibria of short-range electrostatic interactions at molecular interfaces of protein-DNA complexes
Chen, C., Esadze, A., Zandarashvili, L., Nguyen, D., Pettitt, B. M. & Iwahara, J., Jul 16 2015, In: Journal of Physical Chemistry Letters. 6, 14, p. 2733-2737 5 p.Research output: Contribution to journal › Article › peer-review
32 Scopus citations -
Computation of virial coefficients from integral equations
Zhang, C., Lai, C. L. & Pettitt, B. M., Jun 5 2015, In: Journal of Chemical Physics. 142, 21, 214110.Research output: Contribution to journal › Article › peer-review
2 Scopus citations -
Secondary analysis of the NCI-60 whole exome sequencing data indicates significant presence of propionibacterium acnes genomic material in leukemia (RPMI-8226) and central nervous system (SF-295, SF-539, and SNB-19) cell lines
Rojas, M., Golovko, G., Khanipov, K., Albayrak, L., Chumakov, S., Pettitt, B. M., Strongin, A. Y. & Fofanov, Y., Jun 3 2015, In: PloS one. 10, 6, e0127799.Research output: Contribution to journal › Article › peer-review
2 Scopus citations -
Force field-dependent solution properties of glycine oligomers
Drake, J. A. & Pettitt, B. M., Jun 1 2015, In: Journal of Computational Chemistry. 36, 17, p. 1275-1285 11 p.Research output: Contribution to journal › Article › peer-review
Open Access20 Scopus citations -
Solvation and cavity occupation in biomolecules
Lynch, G. C., Perkyns, J. S., Nguyen, B. L. & Pettitt, B. M., May 2015, In: Biochimica et Biophysica Acta - General Subjects. 1850, 5, p. 923-931 9 p.Research output: Contribution to journal › Article › peer-review
Open Access5 Scopus citations -
Twist-induced defects of the P-SSP7 genome revealed by modeling the cryo-EM density
Wang, Q., Myers, C. G. & Pettitt, B. M., Apr 16 2015, In: Journal of Physical Chemistry B. 119, 15, p. 4937-4943 7 p.Research output: Contribution to journal › Article › peer-review
Open Access6 Scopus citations -
Effects of acids, bases, and heteroatoms on proximal radial distribution functions for proteins
Nguyen, B. L. & Pettitt, B. M., Apr 14 2015, In: Journal of Chemical Theory and Computation. 11, 4, p. 1399-1409 11 p.Research output: Contribution to journal › Article › peer-review
Open Access8 Scopus citations -
Systematic identification of single amino acid variants in glioma stem-cell-derived chromosome 19 proteins
Lichti, C. F., Mostovenko, E., Wadsworth, P. A., Lynch, G. C., Pettitt, B. M., Sulman, E. P., Wang, Q., Lang, F. F., Rezeli, M., Marko-Varga, G., Végvári, Á. & Nilsson, C. L., Feb 6 2015, In: Journal of Proteome Research. 14, 2, p. 778-786 9 p.Research output: Contribution to journal › Article › peer-review
16 Scopus citations